Phrap uses Phred quality scores to determine highly accurate consensus sequences and to estimate the quality of the consensus sequences. Phrap was routinely used in some of the largest sequencing projects in the Human Genome Sequencing Project and is currently one of the most widely used DNA sequence assembly programs in the biotech industry. #Chromatogram viewer sequencher software#Phred is often used together with another software program called Phrap, which is a program for DNA sequence assembly. The results can be output as a PHD file, which contains base data as triples consisting of the base call, quality, and position. The entire procedure is rapid, usually taking less than half a second per trace.
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